Thank you Jason and Vlad for all the suggestions..
I am working with the input provided...
In my case, the experimental evidence reports specificity of protein
towards RNA over DNA.
Binding affinity values are not avaliable.
On Wed, Jun 24, 2015 at 8:16 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Wed, Jun 24, 2015 at 9:21 AM, Vlad Cojocaru <
> vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>
> > The default ipb is 2, not 1 ... We did not change this default.
> >
>
> ​Good catch. It is 2, not 1, and MMPBSA.py does not provide direct control
> over this variable.
>
> Thanks,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
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Received on Wed Jun 24 2015 - 10:00:02 PDT
