Re: [AMBER] problem in .pdb after md simulation

From: Vishal Nemaysh <vishal.bioinfotech.gmail.com>
Date: Tue, 16 Jun 2015 13:04:54 +0530

Oh i m sorry madam...

On Tue, Jun 16, 2015 at 1:04 PM, Vishal Nemaysh <
vishal.bioinfotech.gmail.com> wrote:

> Sir i mean when u see my pdb structure which i attached in my mail u can
> batter understand..
> plz suggest my how can i resolve this
>
> On Tue, Jun 16, 2015 at 12:25 PM, Soong Jiaxin <jiaxinsoong.gmail.com>
> wrote:
>
>> May I know what do you mean by "bunches of sticks"? Did you visualise it
>> in
>> VMD?
>>
>> On 16 June 2015 at 14:52, Vishal Nemaysh <vishal.bioinfotech.gmail.com>
>> wrote:
>>
>> > Hi,
>> > i have simulate my protein in 10ns. but after that the structure
>> geometry
>> > is looking somewhat like bunches of sticks in .pdb structure is appear
>> ..
>> > please suggest me how to resolve this..
>> > the .PDB file is attached here with..
>> >
>> > thanking you,
>> >
>> >
>> > --
>> > Vishal
>> > Research Scholar,
>> > Neuropharmaceutical Chemistry lab.,
>> > Dr. B. R. Ambedkar Center for Biomedical Research,
>> > University of Delhi, Delhi-110007
>> > Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
>> > Phone: 91-11-27662778 Mobile: 91+9650736653
>> >
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>
>
>
> --
> Vishal
> Research Scholar,
> Neuropharmaceutical Chemistry lab.,
> Dr. B. R. Ambedkar Center for Biomedical Research,
> University of Delhi, Delhi-110007
> Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
> Phone: 91-11-27662778 Mobile: 91+9650736653
>



-- 
Vishal
Research Scholar,
Neuropharmaceutical Chemistry lab.,
Dr. B. R. Ambedkar Center for Biomedical Research,
University of Delhi, Delhi-110007
Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
Phone: 91-11-27662778 Mobile: 91+9650736653
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Received on Tue Jun 16 2015 - 01:00:03 PDT
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