Re: [AMBER] problem in .pdb after md simulation

From: Vishal Nemaysh <vishal.bioinfotech.gmail.com>
Date: Tue, 16 Jun 2015 13:04:28 +0530

Sir i mean when u see my pdb structure which i attached in my mail u can
batter understand..
plz suggest my how can i resolve this

On Tue, Jun 16, 2015 at 12:25 PM, Soong Jiaxin <jiaxinsoong.gmail.com>
wrote:

> May I know what do you mean by "bunches of sticks"? Did you visualise it in
> VMD?
>
> On 16 June 2015 at 14:52, Vishal Nemaysh <vishal.bioinfotech.gmail.com>
> wrote:
>
> > Hi,
> > i have simulate my protein in 10ns. but after that the structure
> geometry
> > is looking somewhat like bunches of sticks in .pdb structure is appear ..
> > please suggest me how to resolve this..
> > the .PDB file is attached here with..
> >
> > thanking you,
> >
> >
> > --
> > Vishal
> > Research Scholar,
> > Neuropharmaceutical Chemistry lab.,
> > Dr. B. R. Ambedkar Center for Biomedical Research,
> > University of Delhi, Delhi-110007
> > Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
> > Phone: 91-11-27662778 Mobile: 91+9650736653
> >
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> >
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-- 
Vishal
Research Scholar,
Neuropharmaceutical Chemistry lab.,
Dr. B. R. Ambedkar Center for Biomedical Research,
University of Delhi, Delhi-110007
Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
Phone: 91-11-27662778 Mobile: 91+9650736653
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Received on Tue Jun 16 2015 - 01:00:02 PDT
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