Re: [AMBER] Parmed.py_ImportError: No module named ParmedTools.logos

From: Sheehan, Alice <>
Date: Thu, 11 Jun 2015 09:45:29 +0000

It’s working now. Thanks!


On 10 Jun 2015, at 17:22, Jason Swails <<>> wrote:

On Wed, Jun 10, 2015 at 11:54 AM, Sheehan, Alice <<>

Hey Amber users,

I'm new to the linux and having trouble running in Centos. I've
Python 2.7.5 installed but when I enter the command, an error
message is generated (listed below). I looked through the parmed src folder
and have also listed the results below.

Any help with this would be very appreciated!



Traceback (most recent call last):
 File "/usr/local/amber14/bin/", line 11, in <module>
   from ParmedTools.logos import Logo
ImportError: No module named ParmedTools.logos

​AmberTools 15 requires PYTHONPATH to be set in order to properly find
required modules. This is done automatically by the $AMBERHOME/
file, so make sure you have sourced that file (or amber.csh if you use
tcsh/csh) before trying to use any of the Python programs.

I typically source that file in my .bashrc to make sure the Amber
environment is always set up.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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Received on Thu Jun 11 2015 - 03:00:03 PDT
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