It’s working now. Thanks!
Alice
On 10 Jun 2015, at 17:22, Jason Swails <jason.swails.gmail.com<mailto:jason.swails.gmail.com>> wrote:
On Wed, Jun 10, 2015 at 11:54 AM, Sheehan, Alice <a.sheehan14.imperial.ac.uk<mailto:a.sheehan14.imperial.ac.uk>
wrote:
Hey Amber users,
I'm new to the linux and having trouble running parmed.py in Centos. I've
Python 2.7.5 installed but when I enter the parmed.py command, an error
message is generated (listed below). I looked through the parmed src folder
and have also listed the results below.
Any help with this would be very appreciated!
Cheers,
Alice
$ parmed.py
Traceback (most recent call last):
File "/usr/local/amber14/bin/parmed.py", line 11, in <module>
from ParmedTools.logos import Logo
ImportError: No module named ParmedTools.logos
AmberTools 15 requires PYTHONPATH to be set in order to properly find
required modules. This is done automatically by the $AMBERHOME/amber.sh
file, so make sure you have sourced that file (or amber.csh if you use
tcsh/csh) before trying to use any of the Python programs.
I typically source that file in my .bashrc to make sure the Amber
environment is always set up.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Jun 11 2015 - 03:00:03 PDT
