On Wed, Jun 10, 2015 at 11:54 AM, Sheehan, Alice <a.sheehan14.imperial.ac.uk
> wrote:
> Hey Amber users,
>
> I'm new to the linux and having trouble running parmed.py in Centos. I've
> Python 2.7.5 installed but when I enter the parmed.py command, an error
> message is generated (listed below). I looked through the parmed src folder
> and have also listed the results below.
>
> Any help with this would be very appreciated!
>
> Cheers,
>
> Alice
>
> $ parmed.py
> Traceback (most recent call last):
> File "/usr/local/amber14/bin/parmed.py", line 11, in <module>
> from ParmedTools.logos import Logo
> ImportError: No module named ParmedTools.logos
>
​AmberTools 15 requires PYTHONPATH to be set in order to properly find
required modules. This is done automatically by the $AMBERHOME/amber.sh
file, so make sure you have sourced that file (or amber.csh if you use
tcsh/csh) before trying to use any of the Python programs.
I typically source that file in my .bashrc to make sure the Amber
environment is always set up.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jun 10 2015 - 09:30:02 PDT
