Re: [AMBER] Parmed.py_ImportError: No module named ParmedTools.logos

From: Jason Swails <>
Date: Wed, 10 Jun 2015 12:22:39 -0400

On Wed, Jun 10, 2015 at 11:54 AM, Sheehan, Alice <
> wrote:

> Hey Amber users,
> I'm new to the linux and having trouble running in Centos. I've
> Python 2.7.5 installed but when I enter the command, an error
> message is generated (listed below). I looked through the parmed src folder
> and have also listed the results below.
> Any help with this would be very appreciated!
> Cheers,
> Alice
> $
> Traceback (most recent call last):
> File "/usr/local/amber14/bin/", line 11, in <module>
> from ParmedTools.logos import Logo
> ImportError: No module named ParmedTools.logos

​AmberTools 15 requires PYTHONPATH to be set in order to properly find
required modules. This is done automatically by the $AMBERHOME/
file, so make sure you have sourced that file (or amber.csh if you use
tcsh/csh) before trying to use any of the Python programs.

I typically source that file in my .bashrc to make sure the Amber
environment is always set up.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Wed Jun 10 2015 - 09:30:02 PDT
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