Re: [AMBER] Regarding creating Mg2+ ions topology and parameter file

From: David A Case <>
Date: Mon, 8 Jun 2015 07:49:30 -0400

On Mon, Jun 08, 2015, ROOPALI VERMA wrote:
> I want to simulate a complex bound with ADP AND Mg2+ ions.For this i want
> to create prmtop and crd files. i have created parameters file for ADP and
> protein, but won't be able to create parameters file for Mg ions.i have
> used antechamber but it shows following error:

Divalent ions optimized for various water models are already a part of the
standard distribution. Please consult section 3.9 ("Ions") in the 2015 Amber
Reference Manual.


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Received on Mon Jun 08 2015 - 05:00:03 PDT
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