Indrajit,
VMD should be able to save the pdb as a rst file- I'm not sure if amber has
that utility, or if there's other options. Alternatively, you could just
use your average pdb as an input in tleap to make a new topology and
coordinate file to run in sander.
Best,
Kenneth
On Fri, Jun 5, 2015 at 11:26 AM, Indrajit Deb <biky2004indra.gmail.com>
wrote:
> Dear amber users,
>
> I have a average pdb file which have short contacts. I want to convert the
> average pdb file into rst file, so that I can use it as an input for
> sander. Actually I want to energy minimize the average pdb.
>
> So how to convert average pdb file into rst file ?
>
> Thanks
>
> ----indrajit
>
>
>
>
> ---------------------------------------------------------------------
> Indrajit Deb
> Kolkata, India.
> Mob: +919239202278
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>
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Received on Fri Jun 05 2015 - 09:00:03 PDT
