I think you can try the hbond command. In the Amber 14 manual if you look at pages 530-531 you might get an idea of what to do.
I guess more experienced users can add to this info.
Thanks,
Syl
________________________________________
From: Hector A. Baldoni [hbaldoni.unsl.edu.ar]
Sent: Saturday, May 30, 2015 11:43 AM
To: amber.ambermd.org
Subject: [AMBER] water bridges
Hi amber users,
Could someone suggest me a simple way to find water bridges between :LIG
and :REC using cpptraj or scripting.
Thank you,
Hector.
--------------------------------------
Dr. Hector A. Baldoni
Area de Quimica General e Inorganica
Universidad Nacional de San Luis
Chacabuco 917 (D5700BWS)
San Luis - Argentina
hbaldoni at unsl dot edu dot ar
Tel.:+54-(0)266-4520300 ext. 6157
--------------------------------------
I DO NOT DEFINE TIME, SPACE, PLACE, AND MOTION, AS BEING WELL KNOWN TO ALL.
-- NEWTON (1642-1726), PRINCIPIA.
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Received on Sat May 30 2015 - 15:00:02 PDT
