[AMBER] RNA unfolding studies..

From: Asmita Gupta <asmita4des.gmail.com>
Date: Wed, 27 May 2015 16:24:40 +0530

Dear users,

  I am studying an RNA hairpin which retains its structure at 25 deg C, but
melts at physiological temperature (37 deg C).

available literature on RNA unfolding either deals with force-induced
unfolding or high temperature MD or REMD.

Is there any way i can simulate the unfolding pathway/dynamics of this
structure in Amber..as far i know, setting up REMD for this small
temperature scale won't make sense.

Thank you

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Received on Wed May 27 2015 - 04:00:04 PDT
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