GLYCAM can definitely handle a monosaccharide. The only slightly
counter-intuitive thing is that you need to put the anomeric hydroxyl
(or O-methyl) in a separate residue (ROH if hydroxyl), preferably
before the 0M? residue (make ?=B for beta and A for alpha).
On Fri, May 22, 2015 at 10:02 AM, Chris <dlutlife223.163.com> wrote:
> Dear All:
>
> I have a protein with its ligand of a Mannose monosaccharide located in binding site.
>
> How can I prepare the topology file for mannose??? I check the GLYCAM manual and find it is used for construct sugars for more than one, am I right??
> So, does this mean I need prepare mannose using antechamber and load GAFF???
>
>
> Thx!
> Sincerely Chris!
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--
:-) Lachele
Lachele Foley
CCRC/UGA
Athens, GA USA
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Received on Fri May 22 2015 - 10:00:02 PDT
