[AMBER] Does GLYCAM only can deal with Oligosaccharides or Polysaccharides BUT NOT Monosaccharide£¿£¿£¿

From: Chris <dlutlife223.163.com>
Date: Fri, 22 May 2015 22:02:18 +0800 (CST)

Dear All:

I have a protein with its ligand of a Mannose monosaccharide located in binding site.

How can I prepare the topology file for mannose??? I check the GLYCAM manual and find it is used for construct sugars for more than one, am I right??
So, does this mean I need prepare mannose using antechamber and load GAFF???

Sincerely Chris!
AMBER mailing list
Received on Fri May 22 2015 - 07:30:02 PDT
Custom Search