Re: [AMBER] Error while running tleap for protein-RNA complex

From: Jason Swails <>
Date: Tue, 12 May 2015 08:12:39 -0400

On Tue, May 12, 2015 at 5:48 AM, Shreeramesh <> wrote:

> Dear Hector and David,
> Thanks for your valuable suggestions. I added the TER card between missing
> residues in protein (rec1.pdb) and RNA (rec2.pdb). I also changed the
> residue names CYS to CYX. It helped to fix the angle parameter for SH.
> However, the following error remains.
> Can you please help me to solve? and kindly let me know about the
> generation of appropriate library unit for 5' phosphate

​Several tutorials walk through how to do this kind of thing. See (in particular, the GFP tutorial
shows how to create a modified amino acid residue, which will apply to the
modified RNA in an analogous manner).


Jason M. Swails
Rutgers University
Postdoctoral Researcher
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Received on Tue May 12 2015 - 05:30:04 PDT
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