On Tue, May 12, 2015 at 5:48 AM, Shreeramesh <shreeramesh.gmail.com> wrote:
> Dear Hector and David,
>
> Thanks for your valuable suggestions. I added the TER card between missing
> residues in protein (rec1.pdb) and RNA (rec2.pdb). I also changed the
> residue names CYS to CYX. It helped to fix the angle parameter for SH.
> However, the following error remains.
>
> Can you please help me to solve? and kindly let me know about the
> generation of appropriate library unit for 5' phosphate
>
​Several tutorials walk through how to do this kind of thing. See
http://ambermd.org/tutorials/#ligands (in particular, the GFP tutorial
shows how to create a modified amino acid residue, which will apply to the
modified RNA in an analogous manner).
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 12 2015 - 05:30:04 PDT
