On Mon, May 4, 2015 at 1:51 PM, Atila Petrosian <atila.petrosian.gmail.com>
wrote:
> Dear Jason
>
> Thanks for your answer.
>
> Is pmemd related to GPU, only?
>
pmemd runs on CPUs, too. But pmemd on the GPU is *much* faster than pmemd
on CPUs for most GPUs (see
http://ambermd.org/gpus/benchmarks.htm#Benchmarks
for detailed timings).
If I install ambertools on cpu, can I install pmemd? or not?
>
If you want pmemd from Amber 11, it can run on CPUs, but not GPUs. But
pmemd from Amber 11 can be a challenge to compile.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon May 04 2015 - 11:30:09 PDT
