Re: [AMBER] error in amber installation

From: Atila Petrosian <>
Date: Sun, 3 May 2015 18:51:30 +0430

Dear Jason and David,

I have Amber 11 licence. Based on your suggestion, I am going to install
AmberTools 14 with pmemd from the Amber11 codes to get MD runs faster.

I already installed AmberTools 14 as parallel. How to install AmberTools 14
with pmemd from the Amber11 codes? How to compile pmemd after parallel
installation of AmberTools 14? Which command I should use?

Should I do both of parallel installation and pmemd installation?

Two general question : which of pmemd and sander.MPI is faster?
which of pmemd and sander.MPI is more accurate?

I want to do MM-PB(GB)SA in future. Which of pmemd and sander.MPI is more
appropriate for me?

Thanks in advance.

On Sun, May 3, 2015 at 4:22 PM, David A Case <>

> On Sun, May 03, 2015, Atila Petrosian wrote:
> > make[2]: *** No rule to make target `../mortsrc/libmort.a', needed by
> > `sleap'. Stop.
> I'm guessing you should go to my first suggestion, which is to work with
> modern versions of the code. We haven't supported sleap for a *long* time.
> I'm rather surprised that the build is failing in the way you show, but
> don't
> know the solution. (The types of errors you are reporting make me suspect
> a
> corrupted installation, but that is just a guess.)
> Even if you get this working, you will find it difficult to get help with
> problems you might encounter along the line, since very few people (and
> none
> of the developers) are using AmberTools1.5 any more.
> ...dac
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Received on Sun May 03 2015 - 07:30:02 PDT
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