Dear David,
Thanks for your answer.
Based on your sugestion, I used make serial -noMTKpp
But I encountered to following:
make[2]: Leaving directory
`/state/partition1/apps/2_ambr/amber11/AmberTools/src/gleap/plugins'
cd leapsrc && make install
make[2]: Entering directory
`/state/partition1/apps/2_ambr/amber11/AmberTools/src/gleap/leapsrc'
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib
-I../plugins -I../freelib -I. -o strmain.o strmain.cpp
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib
-I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib
-I../plugins -I../freelib -I. -o plugins.o plugins.cpp
make[2]: *** No rule to make target `../mortsrc/libmort.a', needed by
`sleap'. Stop.
make[2]: Leaving directory
`/state/partition1/apps/2_ambr/amber11/AmberTools/src/gleap/leapsrc'
make[1]: *** [sleap] Error 2
make[1]: Leaving directory
`/state/partition1/apps/2_ambr/amber11/AmberTools/src/gleap'
make: *** [serial] Error 2
How to fix it?
On Tue, Apr 28, 2015 at 4:44 PM, David A Case <case.biomaps.rutgers.edu>
wrote:
> On Tue, Apr 28, 2015, Atila Petrosian wrote:
> >
> > I am installing amber11 and ambertools1.5 on ubuntu 11.04, using
> > http://bgamari.github.io/posts/2011-10-16-amber.html.
>
> This seems pretty pointless. I'd recommend getting the current AmberTools
> release (which will be updated to AmberTools15 soon), and installing that
> according to the instructions on the Amber web site. If you find that you
> need the pmemd program, you can consider getting the current version, or
> compiling just pmemd from the Amber11 codes.
>
> >
> > In Serial build step, after using make serial, I encountere with
> >
> > g++ -DHAVE_CONFIG_H -I. -I..
> > -I/export/apps/2_ambr/amber11/AmberTools/src/boost-1.38.0 -I/include
> > -I../src -I../include -I../src/eigen3b2 -DNDEBUG -DUSE_TINYXML
> > -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT MCPB.o -MD -MP -MF
> > .deps/MCPB.Tpo -c -o MCPB.o MCPB.cpp
> > MCPB.cpp: In function 'int main(int, char**)':
> > MCPB.cpp:2959: error: 'class MTKpp::gaussianParser' has no member named
> > 'setnProc'
>
> If you do want to follow the path you have, consider adding the -nomtkpp
> flag
> to configure.
>
> ....dac
>
>
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>
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Received on Sun May 03 2015 - 04:30:02 PDT
