It would be most useful to include the input script or the commands typed in leap. Also, your ZIP is incomplete because it doesn't contain hArsM_SAM.pdb. Best to test your leap run in a separate, clean directory before packing all up and submitting.
Therefore only a guess what you probably want to do:
SAM = loadmol2 sam.mol2
mods = loadamberparams sam.frcmod
saveoff {SAM mods} sam.lib
Cheers,
Hannes.
________________________________________
From: Swithin Hanosh [swithinhanosh.gmail.com]
Sent: 28 March 2015 12:01
To: amber.ambermd.org
Subject: [AMBER] REGARDING ATOM TYPE ERROR
Dear Amber users,
I am following the antechamber tutorial 4b for creating topology and
co-ordinate files for a complex. After creating .prmtop and .inpcrd
file for the organic molecule using R.E.D server created .mol2 file, I
tried to complex the organic molecule with the protein. But, it was
showing the error that the molecule is an unknown residue and atoms
were not in its residue template. An archive file of the operation is
attached with the mail. Please suggest what may be the problem causing
these errors and how to counter them.
Thanking you,
Swithin Hanosh
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Received on Sat Mar 28 2015 - 06:00:02 PDT
