Dear Thomas,
short description of the practical applicability
(how they affect simulations) may be found
for NA in a review we have done recently.
Molecular Dynamics Simulations of Nucleic Acids. From Tetranucleotides to
the Ribosome. Journal of Physical Chemistry Letters, 5, 2014, 1771-1782
Best wishes, Jiri
On Tue, 17 Mar 2015, Thomas Exner wrote:
> Date: Tue, 17 Mar 2015 10:46:24 +0100
> From: Thomas Exner <thomas.exner.uni-konstanz.de>
> Reply-To: AMBER Mailing List <amber.ambermd.org>
> To: AMBER Mailing List <amber.ambermd.org>
> Subject: [AMBER] Differences in AMBER force fields
>
> Dear AMBER developers:
>
> I was searching for a detailed description of the differences between
> versions of the AMBER force field but was not able to find anything in
> the manuals as well as the net. Especially, I am interested in the
> nucleic acid part since I know that there were many developments in the
> last time. When, e.g., the chi(OL4) correction was included in the
> standard force field?
>
> Thank you very much.
> Thomas
>
>
> --
> ________________________________________________________________________________
>
> Dr. Thomas E. Exner
> Theoretische Pharmazeutische Chemie & Biophysik
> Lehrstuhl Pharmazeutische Chemie
> Pharmazeutisches Institut
> Eberhard Karls Universität Tübingen
> Auf der Morgenstelle 8 (Haus B)
> 72076 Tübingen
> Germany
>
> Tel.: +49-(0)7071-2976969
> Mobil: +49-(0)171-3807485
> Fax: +49-(0)7071-295637
> E-Mail: Thomas.Exner[at]uni-tuebingen.de
>
> Fachbereich Chemie und Zukunftskolleg
> Universität Konstanz
> 78457 Konstanz
> Germany
>
> Tel.: +49-(0)7531-882015
> Fax: +49-(0)7531-883587
> E-Mail: Thomas.Exner[at]uni-konstanz.de
> ________________________________________________________________________________
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Received on Fri Mar 20 2015 - 09:30:02 PDT
