Dear all,
I would like to know about some appropriate force-field in AMBER to play
with the thermodynamics of nucleobases binding to proteins? I am very new
to simulations of nucleic acids, so have not much idea, which ff to start
with. There are many articles using certain versions of GROMOS, but I am
not aware of such developments after AMBER-99 in AMBER community. If there
are some advanced ff that can be used for simulation of single nucleobase
binding to proteins using implicit solvent models?
Best,
Mish
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Received on Sun Mar 15 2015 - 12:30:03 PDT
