[AMBER] RNA's sugar modification

From: jacob wick <jacobwick.la.gmail.com>
Date: Sun, 15 Mar 2015 23:35:20 +0530

Hi all,
I have downloaded a RNA molecule pdb from Nucleic acid databse. When I am
trying to modify its sugar ring in xleap ( as I want to cleave its c2' -
c3' bond), loading it again in leap giving me the unmodified structure back
(I guess leap is adding the modified residues back to the residue
tamplate). Please suggest how can I modify all sugar ring present in the

Thanks in advance,
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Received on Sun Mar 15 2015 - 11:30:02 PDT
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