[AMBER] Question in Amber atom types

From: asdda asa <nadaafiva.gmail.com>
Date: Thu, 22 Jan 2015 08:26:13 +0800

Dear Amber users,

I am using amber force field (GAFF) to parameterize a ligand. The ligand
contain two same moieties attached to different positions. However, the
atom types of each atom of the two moiety is not exactly same. There is one
same carbon atom having different atom type, one carbon is assigned as cd,
while the other carbon atom was assigned as cc. How can these two
different. The two carbon is exactly same.

Thanks in advance for any helps.


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Received on Wed Jan 21 2015 - 16:30:03 PST
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