On Fri, Jan 16, 2015, Francesco Pietra wrote:
> if ParmEd reports that a bond exists, then the prmtop defines
> that bond... VMD *should* report all bonds when loading a prmtop
Are the missing bonds in VMD between two different molecules (i.e. with
different chain ID's, or with a TER card between them)? Or, is there anything
that is different about the bonds that VMD shows and the ones that it misses?
Can you make a small example that illustrates the problem?
...dac
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Received on Sat Jan 17 2015 - 07:00:02 PST
