On Thu, Jan 15, 2015 at 1:08 PM, Atila Petrosian
<atila.petrosian.gmail.com> wrote:
> Isn't there another way to solve imaging problem other than using cpptraj
> in
> AmberTools 14?
Maybe. You'll have to play around with your center/image commands a
bit though. Imaging properly for every frame can be tricky, which is
why 'autoimage' was created in the first place. Try centering on your
biggest molecule, and adding the 'center' keyword to your 'image'
command.
However, I *strongly* encourage you to upgrade to AmberTools 14 (it's
free). Amber 10 and 11 are 7 and 5 years old at this point, and there
have been many *many* advances and improvements (including lots of
important bugfixes) to Amber since then.
Good luck,
-Dan
>
> Best wishes,
> Atila
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Thu Jan 15 2015 - 13:00:03 PST
