I loaded parm7/rst7 to VMD
francesco
On Mon, Jan 5, 2015 at 1:31 PM, David A Case <case.biomaps.rutgers.edu>
wrote:
> On Mon, Jan 05, 2015, Francesco Pietra wrote:
>
> > I forgot to ask why VMD does not show the existing (according to leap and
> > parmed.py) bonds between the protein backbone and the active center.
>
> If you just load a pdb file into VMD, it has no knowledge of bonds, and
> makes
> guesses based on distances. If you load the parm7 file, followed by
> coordinates, you should see the bonds that are in the parm7 file.
>
> ....dac
>
>
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Received on Mon Jan 05 2015 - 07:30:02 PST
