Re: [AMBER] visualize CPPTRAJ clculated modes

From: Jason Swails <>
Date: Thu, 30 Oct 2014 07:33:21 -0400

On Thu, 2014-10-30 at 10:35 +0100, Vlad Cojocaru wrote:
> Dear Ambers,
> Can anybody recommend me a program to visualize the modes and
> projections created by cpptraj ? VMD used to have a plugin "IED" but
> this is quite old and doe not work with newest VMD versions ...

You can actually have cpptraj print out full trajectory files with the
"modes" command for this purpose.

If you type "help modes" in the cpptraj command interpreter, it will
give you a list of "trajout" options that let you control how the
trajectory is printed.


Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Thu Oct 30 2014 - 05:00:02 PDT
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