Hello,
I've been a development version of Amber 14, amber14_071014.tar.gz, so that I can do some performance experiments on our PHI cards. I have no problems building this version of Amber for our x86_64 nodes, however the PHI "make install" fails with what appears to be a bug. This is what I see:
./configure -mic_native -noX11 intel
make install
......
x86_64-k1om-linux-ld: /scratch/djb1/phi/amber14_071014/lib/libnetcdf.a(libdispatch_la-dcopy.o)(.text+0xe9f): unresolvable R_X86_64_PLT32 relocation against symbol `free..GLIBC_2.14'
x86_64-k1om-linux-ld: /scratch/djb1/phi/amber14_071014/lib/libnetcdf.a(libdispatch_la-derror.o)(.text+0x16): unresolvable R_X86_64_PLT32 relocation against symbol `strerror..GLIBC_2.14'
x86_64-k1om-linux-ld: BFD (GNU Binutils) 2.22.52.20120302 internal error, aborting at /sandbox/build/tmp/tmp/work/x86_64-nativesdk-mpsssdk-linux/binutils-cross-canadian-k1om-2.22+mpss3.4-1/binutils-2.22+mpss3.4/bfd/elf64-x86-64.c line 3382 in elf_x86_64_relocate_section
x86_64-k1om-linux-ld: Please report this bug.
make[3]: *** [/scratch/djb1/phi/amber14_071014/bin/pmemd.mic_native] Error 1
make[3]: Leaving directory `/scratch/djb1/phi/amber14_071014/src/pmemd/src'
make[2]: *** [mic] Error 2
make[2]: Leaving directory `/scratch/djb1/phi/amber14_071014/src/pmemd'
make[1]: *** [mic] Error 2
make[1]: Leaving directory `/scratch/djb1/phi/amber14_071014/src'
make: *** [install] Error 2
I'm working on a RHELS 6.4 cluster and using a recent version, v15, of the Intel compilers and MKL v11.0_4. Does anyone please have any ideas what might be wrong here? I understand, of course, that this is a development version of Amber 14 and so it may not come with the latest bug fixes.
Best regards - David.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Oct 13 2014 - 02:30:02 PDT
