Hi all,
We have updated all the following drivers on ReadHat 6.4 (see below), and still running pmemd.cuda I get a different error this time, sander works normally:
-bash-4.1$ pmemd.cuda -O -i md.in -p RIT_6mol_h_wat.prmtop -c RIT_6mol_h_wat_eq5.rst -ref RIT_6mol_h_wat_eq5.rst -o RIT_6mol_h_wat_md1.out -x RIT_6mol_h_wat_md1.mdcrd -r RIT_6mol_h_wat_md1.rst
pmemd.cuda: error while loading shared libraries: libcurand.so.5.5: cannot open shared object file: No such file or directory
Is this something known to you?
Looking into different forums, our technical people don't find the specific library....
Any ideas or suggestions?
Thanks!!
Fabian
updated packages :
cuda-cudart-6-5-6.5-14.x86_64
cuda-curand-dev-6-5-6.5-14.x86_64
cuda-drivers-340.29-0.x86_64
cuda-repo-rhel6-6.5-14.x86_64
cuda-license-6-5-6.5-14.x86_64
cuda-npp-dev-6-5-6.5-14.x86_64
cuda-cufft-6-5-6.5-14.x86_64
cuda-visual-tools-6-5-6.5-14.x86_64
cuda-6.5-14.x86_64
cuda-npp-6-5-6.5-14.x86_64
cuda-cublas-6-5-6.5-14.x86_64
cuda-command-line-tools-6-5-6.5-14.x86_64
cuda-cusparse-dev-6-5-6.5-14.x86_64
cuda-documentation-6-5-6.5-14.x86_64
cuda-6-5-6.5-14.x86_64
cuda-core-6-5-6.5-14.x86_64
cuda-cudart-dev-6-5-6.5-14.x86_64
cuda-cusparse-6-5-6.5-14.x86_64
cuda-samples-6-5-6.5-14.x86_64
cuda-runtime-6-5-6.5-14.x86_64
cuda-driver-dev-6-5-6.5-14.x86_64
cuda-misc-headers-6-5-6.5-14.x86_64
cuda-cufft-dev-6-5-6.5-14.x86_64
cuda-toolkit-6-5-6.5-14.x86_64
cuda-cublas-dev-6-5-6.5-14.x86_64
cuda-curand-6-5-6.5-14.x86_64
xorg-x11-drv-nvidia-gl-340.29-1.el6.i686
xorg-x11-drv-nvidia-libs-340.29-1.el6.x86_64
xorg-x11-drv-nvidia-devel-340.29-1.el6.i686
nvidia-kmod-340.29-2.el6.x86_64
xorg-x11-drv-nvidia-340.29-1.el6.x86_64
xorg-x11-drv-nvidia-gl-340.29-1.el6.x86_64
xorg-x11-drv-nvidia-devel-340.29-1.el6.x86_64
xorg-x11-drv-nvidia-libs-340.29-1.el6.i686
HPC Support
CIS - Technion
_______________________________
Fabian Glaser, PhD
Head of the Structural Bioinformatics section
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary
Center for Life Sciences and Engineering
Technion - Israel Institute of Technology
Haifa 32000, ISRAEL
fglaser.technion.ac.il
Tel: +972 4 8293701
Fax: +972 4 8225153
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Received on Thu Sep 18 2014 - 02:00:03 PDT
