Thanks, I did just get this now, using --with-netcdf=DIR does not work but with a space it is fine.
-----Original Message-----
From: Jason Swails [mailto:jason.swails.gmail.com]
Sent: Thursday, September 11, 2014 5:28 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Compiling Amber14 using --with-netcdf
> On Sep 11, 2014, at 7:20 PM, "Lawrenz, Morgan" <mlawrenz.amgen.com> wrote:
>
> Hi,
> I am trying to compile Amber14 using a system install of netcdf, due to some issues with the bundled netcdf not liking the use of nonstandard compiler names, see the thread below:
> http://dev-archive.ambermd.org/201309/0002.html
>
> However, I'm confused about how to run the configure script with this option. I see that there is a full usage definition in the configure2 script in AmberTools, but cannot figure out how to run it.
> Please let me know if I am missing something.
I use this flag all the time and it works fine. You need to supply a path to the NetCDF installation following the --with-netcdf flag. My guess is that you were skipping that part.
But giving us exact commands and output (with relevant error messages) will help us give better guesses.
HTH,
Jason
> Thanks
> Morgan
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--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Sep 11 2014 - 18:00:02 PDT
