[AMBER] Query for Hbond lifetime analysis with AmberTools14

From: Indrajit Deb <biky2004indra.gmail.com>
Date: Wed, 10 Sep 2014 15:30:33 +0530

Dear AMBER users,

I have queries regarding the hbond analysis command using cpptraj with
AmberTools14.

I found in the mailing list that it has been suggested to use run command
after hbond command followed by runanalysis command to calculate the hbond
lifetime. But those instructions were for AmberTools13. In AmberTools13, in
case of hond analysis with cpptraj there was an option as follows:

"hbond [<dataset name>]"

‚Äčthis data can be used for lifetime analysis.

But in case of AmberTools14, there is no "[<dataset name>]" option, then
how to calculate the lifetime.

Please suggest

-----indrajit‚Äč




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Indrajit Deb
Kolkata, India.
Mob: +919239202278
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Received on Wed Sep 10 2014 - 03:30:02 PDT
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