Re: [AMBER] system size more than 1000 residues

From: Jason Swails <jason.swails.gmail.com>
Date: Thu, 28 Aug 2014 16:53:14 -0400

On Thu, Aug 28, 2014 at 3:36 PM, Pengzhi Zhang <zhangpengzhi1988.gmail.com>
wrote:

> Dear AMBER users,
>
> I use coarse-grained protein model (each residue has 2 beads) and run
> with modified version of AMBER10. I am trying to build the prmtop file
> for a system with ~5000 residues, I notice that in the prmtop file the
> residue label runs out up to 999 and recycle again ... Does this will
> cause a problem in sander?
>
> Any comments and suggestions are appreciated!
>

​It might cause a problem. Why does the residue number recycle after 999?


-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Aug 28 2014 - 14:00:02 PDT
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