[AMBER] system size more than 1000 residues

From: Pengzhi Zhang <zhangpengzhi1988.gmail.com>
Date: Thu, 28 Aug 2014 14:36:12 -0500

Dear AMBER users,

I use coarse-grained protein model (each residue has 2 beads) and run
with modified version of AMBER10. I am trying to build the prmtop file
for a system with ~5000 residues, I notice that in the prmtop file the
residue label runs out up to 999 and recycle again ... Does this will
cause a problem in sander?

Any comments and suggestions are appreciated!


Graduate student
Depart of Physics
University of Houston

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Received on Thu Aug 28 2014 - 13:00:02 PDT
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