On Wed, Aug 20, 2014 at 5:36 PM, Hallel Freedman <hfreedma.ualberta.ca>
wrote:
> Jason,
> Yes I am getting:
> /global/software/amber/amber14/bin/sander: error while loading shared
> libraries: libfftw3.so.3: cannot open shared object file: No such file or
> directory
> Does this mean that there is a problem with the install?
>
No, it simply means that you didn't source the Amber environment script
that was provided by configure. Try running the following command:
source /global/software/amber/amber14/amber.sh
or if you use csh/tcsh:
source /global/software/amber/amber14/amber.csh
This should set up not only AMBERHOME and PATH, but LD_LIBRARY_PATH as well
(so the loader can find libfftw3.so.3 at runtime).
If you want your environment to be set up every time you start a shell, add
the source command to your shell resource file (e.g., ~/.bashrc, ~/.cshrc,
~/.zshrc -- whatever is the correct file for your shell on that machine).
Hope this helps,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Wed Aug 20 2014 - 16:00:03 PDT
