Re: [AMBER] Contacts

From: Jason Swails <>
Date: Wed, 20 Aug 2014 09:58:32 -0400

On Wed, 2014-08-20 at 18:44 +0530, Sourav Purohit wrote:
> Hi Jason,
> The manual state that "contact" command calculates the contacts between all
> the atoms of the <mask>. I wanted to know whether the same can be done
> between two masks. Like if I want to calculate the contacts made by atoms
> in :1-10 only with the atoms belonging to :11-20. If I give :1-20 (as only
> one mask can be specified) as mask, the contact command calculates contacts
> between an atom of residue 1 with that of residue 2 and so on, which I
> don't want.

Note that I also suggested that you take a look at "nativecontacts".

Jason M. Swails
Rutgers University
Postdoctoral Researcher
AMBER mailing list
Received on Wed Aug 20 2014 - 07:00:03 PDT
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