Re: [AMBER] Converting (rst) file to PDB using ambpdb

From: menwer momo <masalmeh2007.yahoo.com>
Date: Tue, 5 Aug 2014 15:23:33 -0700

Does that mean that the ambpdb program gust picks the "last" coordinates , or it takes the average of the coordinates throughout the simulation, and then represent them as PDB file?



On Wednesday, August 6, 2014 12:58 AM, Jason Swails <jason.swails.gmail.com> wrote:
 


On Tue, Aug 5, 2014 at 4:40 PM, menwer momo <masalmeh2007.yahoo.com> wrote:


> Hi,
>
> One can convert the coords file (rst) of a "production" simulation to a
> PDB file to take a look at the structure. Does this structure represent the
> most stable structure obtained in that simulation or what?
>

‚ÄčNo, it's just a structure in the ensemble like any other.

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Aug 05 2014 - 15:30:03 PDT
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