Re: [AMBER] Converting (rst) file to PDB using ambpdb

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Tue, 05 Aug 2014 15:18:52 -0700

In particular, the 'rst' file represents the end coordinates and velocities for the run.

Bill

<div>-------- Original message --------</div><div>From: Jason Swails <jason.swails.gmail.com> </div><div>Date:08/05/2014 2:57 PM (GMT-08:00) </div><div>To: menwer momo <masalmeh2007.yahoo.com>, AMBER Mailing List <amber.ambermd.org> </div><div>Subject: Re: [AMBER] Converting (rst) file to PDB using ambpdb </div><div>
</div>On Tue, Aug 5, 2014 at 4:40 PM, menwer momo <masalmeh2007.yahoo.com> wrote:

> Hi,
>
> One can convert the coords file (rst) of a "production" simulation to a
> PDB file to take a look at the structure. Does this structure represent the
> most stable structure obtained in that simulation or what?
>

‚ÄčNo, it's just a structure in the ensemble like any other.

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Aug 05 2014 - 15:30:02 PDT
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