[AMBER] mmpbsa on charged sytem

From: Mary Varughese <maryvj1985.gmail.com>
Date: Tue, 5 Aug 2014 12:49:26 +0530

Sir,
I have a nucleic acid ligand system with negatively charged ligand.
(mimor groove binding) cooH group protrude out of the groove. i would
like to do an mmpbsa calculation retaining certain amount of water
shell around the complex. Is it possible to do so? is there any
reference papers available in this regard?


thankimg you
mary

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Aug 05 2014 - 00:30:02 PDT
Custom Search