[AMBER] question about lipid tutorial

From: Jonathan Gough <jonathan.d.gough.gmail.com>
Date: Thu, 31 Jul 2014 16:15:57 -0400

Hi everyone,

I was working through the lipid tutorial and I had a question. During the
04_hold portion of the simulation does the water expand? and spread out?
 Is the system in a periodic box and the water/system would stay together.
I'm just trying to see if there is something I am doing wrong.

Thanks,
Jonathan

screenshots below showing the system at the beginning of the simulation and
then part way along.

https://www.dropbox.co
m/s/5e2zgnxi413okm4/Screenshot%202014-07-31%2016.03.54.png

https://www.dropbox.com/s/dn7xc93klne4hks/Screenshot%202014-07-31%2016.04.15.png
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jul 31 2014 - 13:30:02 PDT
Custom Search