yes sir sure,
the mol2 file is attached herewith please find it
On Sat, Jul 19, 2014 at 6:04 PM, David A Case <case.biomaps.rutgers.edu>
wrote:
> On Sat, Jul 19, 2014, Vishal Nemaysh wrote:
> >
> > I am a newbie to use the AMBER 12 and after generate mol2 file i trying
> to
> > run the command as follow:
> > *antechamber -i DNA.mol2 -fi mol2 -o DNA.prepin -fo pepi*
>
> Last argument should be "prepi", not "pepi". This may be the problem,
> since
> antechamber is not very good at error handling.
>
> > . I have encountered the following error massege:
> > *memory allocation error for *bond*
>
> Can you provide your input mol2 file?
>
> Finally, why do you want the prepi file? We are encouraging users to use
> mol2 instead, and would like to retire the prep format (which is just there
> because of some code that was written in the 1970's at the very beginning
> of
> Amber.)
>
> ...dac
>
>
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>
--
Vishal
Research Scholar,
Neuropharmaceutical Chemistry lab.,
Dr. B. R. Ambedkar Center for Biomedical Research,
University of Delhi, Delhi-110007
Email: *vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
Phone: 91-11-27662778 Mobile: 91+9650736653
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Received on Sat Jul 19 2014 - 10:00:02 PDT
