Re: [AMBER] Fwd: problem in installation of ambertools14

From: Raman Parkesh <rparkesh.gmail.com>
Date: Fri, 18 Jul 2014 16:55:17 +0530

Hi Vidhushi,
You have two options here
1) you can compile without X11 for that you have to specify -noX11 at the
configuration starge
  e.g, you can configure with the command ./configure -noX11 gnu (or
whatever complier you want.)
X11 files are mainly used for xleap.

2) your X11 libraries are in the /usr/lib64 while the configure files
searches it in /usr/lib. You can workout this problem using link command,
for example,

  ln -s /usr/lib64/libXt.so.6 /usr/lib/libXt.so
  ln -s /usr/lib64/libXtst.so.t /usr/lib/libXtst.so

you can even copy these files to /usr/lib directory. After this you can
configure by typing

                                   ./configure gnu (or any compiler you
want)

I hope this helps.

 regards,
raman




On 18 July 2014 16:43, Vidushi Sharma <vidushimaitry.gmail.com> wrote:

> ---------- Forwarded message ----------
> From: Vidushi Sharma <vidushimaitry.gmail.com>
> Date: Fri, Jul 18, 2014 at 4:31 PM
> Subject: problem in installation of ambertools14
> To: amber.ambermd.org
>
>
> Hi All,
> I am trying to install AmberTool14 in my system (centos 6.4). While
> configuring it shows following warning :
>
> ERROR: the X11 libraries are not in the usual location !
> To search for them try the command: locate libXt
> On new Fedora OS's install the libXt-devel libXext-devel
> libX11-devel libICE-devel libSM-devel packages.
> On old Fedora OS's install the xorg-x11-devel package.
> On RedHat OS's install the XFree86-devel package.
> On Ubuntu OS's install the xorg-dev package.
> To build Amber without XLEaP, re-run configure with '-noX11:
> ./configure -noX11 gnu
>
> I googled the same error and found that it is because of missing X11 files.
> At next, I checked for x11 in my system with following command :
>
> locate libXt
>
> and I got following output :
> /usr/lib/libXtst.so.6
> /usr/lib/libXtst.so.6.1.0
> /usr/lib64/libXt.so.6
> /usr/lib64/libXt.so.6.0.0
> /usr/lib64/libXtst.so.6
> /usr/lib64/libXtst.so.6.1.0
> /usr/share/doc/libXt-1.1.3
> /usr/share/doc/libXtst-1.2.1
> /usr/share/doc/libXt-1.1.3/COPYING
> /usr/share/doc/libXt-1.1.3/ChangeLog
> /usr/share/doc/libXtst-1.2.1/COPYING
> /usr/share/doc/libXtst-1.2.1/ChangeLog
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/checksum_data
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/checksum_type
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/from_repo
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/from_repo_revision
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/from_repo_timestamp
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/installed_by
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/reason
>
> /var/lib/yum/yumdb/l/56f707ebb719471b5c61a4dc00e1e5cbda16fb08-libXtst-1.2.1-2.el6-x86_64/releasever
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/checksum_data
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/checksum_type
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/from_repo
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/from_repo_revision
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/from_repo_timestamp
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/installed_by
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/reason
>
> /var/lib/yum/yumdb/l/5e7d976154376b683b542c5acd3d121d20b64c6e-libXtst-1.2.1-2.el6-i686/releasever
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/checksum_data
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/checksum_type
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/from_repo
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/from_repo_revision
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/from_repo_timestamp
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/installed_by
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/reason
>
> /var/lib/yum/yumdb/l/ad8b5c3f8b1ae529ac5ab4a90d3d33189f6a7cf4-libXt-1.1.3-1.el6-x86_64/releasever
>
>
>
> As far as I understand it, x11 is installed in my system. Now I dont know
> how to tell configure file about location of installed x11 files..
>
> I just put following line at the end of configure file :
>
> XHOME=/usr/lib64
> XLIBS= -L/usr/lib64
>
> But during recompilation, it shows the same error. i.e.
>
> the X11 libraries are not in the usual location !
>
> Please help me how to solve this issue..
>
>
>
>
> --
> Regards
>
>
>
>
> *Vidushi SharmaPh.D. Scholar (Pharmaceutical Chemistry)DIPSAR, Pushp Vihar
> Delhi ( University of Delhi ), INDIA*
>
>
>
> --
> Regards
>
>
>
>
> *Vidushi SharmaPh.D. Scholar (Pharmaceutical Chemistry)DIPSAR, Pushp
> ViharDelhi ( University of Delhi ), INDIA*
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>
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Received on Fri Jul 18 2014 - 04:30:03 PDT
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