Thanks Kshatresh and Jason for your kind reply.
Ravi
On Sat, Jun 14, 2014 at 6:58 PM, Kshatresh Dutta Dubey <kshatresh.gmail.com>
wrote:
> Thanks Jason making me more clear....
>
>
> On Sat, Jun 14, 2014 at 4:07 PM, Jason Swails <jason.swails.gmail.com>
> wrote:
>
> > On Sat, Jun 14, 2014 at 5:03 AM, Kshatresh Dutta Dubey <
> > kshatresh.gmail.com>
> > wrote:
> >
> > > Dear Ravi,
> > >
> > > Amber uses Velocity Verlet as default integration scheme in most of
> > the
> > > cases. However, for Langevin dynamics, using ntt=3, it uses Leapfrog
> and
> > > for Amoeba it uses beeman_integrator.
> > >
> >
> > Actually sander and pmemd always use leapfrog (although Beeman is
> > available for Amoeba simulations).
> >
> > mdgx and nab both use Velocity Verlet.
> >
> > All the best,
> > Jason
> >
> > --
> > Jason M. Swails
> > BioMaPS,
> > Rutgers University
> > Postdoctoral Researcher
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> With best regards
>
> ************************************************************************************************
> Dr. Kshatresh Dutta Dubey
> Post Doctoral Researcher,
> c/o Prof Sason Shaik,
> Hebrew University of Jerusalem, Israel
> Jerusalem, Israel
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Sun Jun 15 2014 - 21:30:03 PDT
