Thanks Jason making me more clear....
On Sat, Jun 14, 2014 at 4:07 PM, Jason Swails <jason.swails.gmail.com>
wrote:
> On Sat, Jun 14, 2014 at 5:03 AM, Kshatresh Dutta Dubey <
> kshatresh.gmail.com>
> wrote:
>
> > Dear Ravi,
> >
> > Amber uses Velocity Verlet as default integration scheme in most of
> the
> > cases. However, for Langevin dynamics, using ntt=3, it uses Leapfrog and
> > for Amoeba it uses beeman_integrator.
> >
>
> Actually sander and pmemd always use leapfrog (although Beeman is
> available for Amoeba simulations).
>
> mdgx and nab both use Velocity Verlet.
>
> All the best,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
With best regards
************************************************************************************************
Dr. Kshatresh Dutta Dubey
Post Doctoral Researcher,
c/o Prof Sason Shaik,
Hebrew University of Jerusalem, Israel
Jerusalem, Israel
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Received on Sat Jun 14 2014 - 07:00:03 PDT
