Sorry I have found solution for my query as already solved here.
http://archive.ambermd.org/201212/0046.html
Rajeswari
On Fri, Jun 13, 2014 at 7:43 PM, Rajeswari A. <rajeswari.biotech.gmail.com>
wrote:
> Dear all,
> I wish to know is there any way to do rmsd calculation of a trajectory
> aligning all C-alpha atoms with reference structure which is having same
> number of C-alpha atoms but different number of total atoms?
>
> Thanks,
> Rajeswari
>
--
Rajeswari A,
PhD Research Scholar,
Computational Biophysics Lab,
Department of Biotechnology,
Indian Institute of Technology Madras,
Chennai 600 036, Tamil Nadu, India.
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Received on Fri Jun 13 2014 - 07:30:03 PDT
