[AMBER] Rmsd with reference structure having different number of total atoms

From: Rajeswari A. <rajeswari.biotech.gmail.com>
Date: Fri, 13 Jun 2014 19:43:05 +0530

Dear all,
I wish to know is there any way to do rmsd calculation of a trajectory
aligning all C-alpha atoms with reference structure which is having same
number of C-alpha atoms but different number of total atoms?

Thanks,
Rajeswari
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Received on Fri Jun 13 2014 - 07:30:02 PDT