Re: [AMBER] Is it possible to tleap a protein molecule without adding terminal atoms?

From: Jason Swails <jason.swails.gmail.com>
Date: Mon, 09 Jun 2014 08:33:49 -0400

On Mon, 2014-06-09 at 20:12 +0800, #YIP YEW MUN# wrote:
> Hi all, I wish to ask if it's possible to tleap a protein molecule without
> adding terminal atoms? Urgent, appreciate any help provided. =)

You want dangling valences at both termini? Why? This is completely
unphysical.

You can make a copy of the leaprc file you want to use and get rid of
the "addPdbResMap" command that maps terminal residues to their C- and
N-terminal versions (then use that leaprc file). I can't imagine any
situation in which you would actually _want_ to do this, though.

HTH,
Jason

-- 
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Mon Jun 09 2014 - 06:00:03 PDT
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