On Mon, 2014-06-09 at 20:12 +0800, #YIP YEW MUN# wrote:
> Hi all, I wish to ask if it's possible to tleap a protein molecule without
> adding terminal atoms? Urgent, appreciate any help provided. =)
You want dangling valences at both termini? Why? This is completely
unphysical.
You can make a copy of the leaprc file you want to use and get rid of
the "addPdbResMap" command that maps terminal residues to their C- and
N-terminal versions (then use that leaprc file). I can't imagine any
situation in which you would actually _want_ to do this, though.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jun 09 2014 - 06:00:03 PDT