I think Zn is one of the cofactor attached with your complex. Zn parameter
you can get easily by googling previous Amber questions as well as any
chemistry workbook. Add line here mm_pbsa_calceneent.pm hopefully it should
work.
On Mon, Jun 2, 2014 at 1:27 PM, Jason Swails <jason.swails.gmail.com> wrote:
> On Mon, 2014-06-02 at 04:04 -0700, Roza M wrote:
> > Dear amber users,
> >
> >
> > I am trying to calculate the binding free energy for Zif 268-DNA
> > complex using MM-PBSA, but I couldn't because it gives me the
> > following : " no radius found for ZN " , In which file should I write
> > the radius for Zn atom?
>
> What kind of calculation are you running? What is your input file?
> What is your exact error message?
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Thanks & Regards;
Soumendranath Bhakat
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jun 02 2014 - 05:30:04 PDT
