Dear Robin;
Instead of distance.dat use distance.agr extension.
Go to terminal
type bash
xmgrace distance.agr it should plot.
Otherwise if you have windows you can use origin data analysis software
which is compatible with excel.
On Sun, Jun 1, 2014 at 10:05 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> If you are using cpptraj and your output is 'byatom' (the default) you
> should be able to create a gnuplot-readable file directly by changing the
> output extension to .gnu in the matrix command. You should also be able to
> convert an existing square matrix data file to gnuplot format like so:
>
> readdata distmat.dat read2d
> writedata distmat.dat distmat.gnu
>
> Hope this helps,
>
> -Dan
>
> On Saturday, May 31, 2014, Robin Jain <robinjain.chem.gmail.com> wrote:
>
> > Dear all,
> > i am calculating map of average distance for 438 Oxygen atoms and i give
> > the command matrix and got a output file dismat.dat which is a matrix
> > file. Now i want to plot it. So please help in this regard that how can i
> > plot it and which freely available software can be used for this plot.
> > Thanking You.
> > --
> > Robin Jain
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> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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--
Thanks & Regards;
Soumendranath Bhakat
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Received on Sun Jun 01 2014 - 10:00:03 PDT
