Re: [AMBER] strip some atoms to compute RMSD

From: Asaminew Haile <ashaethio.gmail.com>
Date: Tue, 22 Apr 2014 08:12:19 -0400

On Apr 22, 2014, at 7:56 AM, Marlet Martinez <marletm8.gmail.com> wrote:

> Dear Amber users,
>
> I am training to make some structural analysis in just of the two chains
> of my protein, since their numbering is exactly the same e.g 1-20 and the
> both are named as chain "C"
>
> So I was wondering if there is a way in amber to strip atoms instead of
> residues like when executing strip command e.g: strip: 1-20
example
strip 1-20.H*
 will strip all Hydrogen

> (this only
> works to "mask" residues but not atoms" in order to perform RMSD
> calculation.
>
> Thanks in advance,
>
> Best regards
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Received on Tue Apr 22 2014 - 05:30:02 PDT
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