[AMBER] strip some atoms to compute RMSD

From: Marlet Martinez <marletm8.gmail.com>
Date: Tue, 22 Apr 2014 13:56:40 +0200

Dear Amber users,

I am training to make some structural analysis in just of the two chains
of my protein, since their numbering is exactly the same e.g 1-20 and the
both are named as chain "C"

So I was wondering if there is a way in amber to strip atoms instead of
residues like when executing strip command e.g: strip: 1-20 (this only
works to "mask" residues but not atoms" in order to perform RMSD
calculation.

 Thanks in advance,

Best regards
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Received on Tue Apr 22 2014 - 05:00:03 PDT
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