Hi,
On Sat, Apr 19, 2014 at 10:38 PM, Yip Yew Mun <yipy0005.gmail.com> wrote:
> However, when I visualised it using VMD, the eigenmotions look distorted. Therefore, I wish to confirm if the script above is logical. If so, the topol.pdb that I use should be the full protein instead of the segment which I did PCA on, right?
What exactly did you visualize, and what steps did you follow? It's
not clear how you are determining things are 'distorted'.
-Dan
>
> Thanks.
>
> Regards
> Yip Yew Mun
> Graduate, PhD
> Chemistry and Biological Chemistry
> School of Physical and Mathematical Sciences
> Nanyang Technological University
>
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Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
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Received on Mon Apr 21 2014 - 08:00:04 PDT
