Re: [AMBER] generating topology

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 19 Mar 2014 10:01:34 -0400

On Wed, Mar 19, 2014, Vijay Manickam Achari wrote:
>
> At the point it finishes I get some messages related to improper torsion
> angles. The message is as below:
>
> old PREP-specified impropers:
>  <TR0 1>:  CA   OXT  C    O   
>  <TR0 1>:  CB   CD2  CG   CD1 
>  <TR0 1>:  CG   HD1  CD1  NE1 
>  <TR0 1>:  CE2  CD1  NE1  HE1 
>  <TR0 1>:  CD2  CZ2  CE2  NE1 
>  <TR0 1>:  CE2  CE3  CD2  CG  
>  <TR0 1>:  CD2  CZ3  CE3  HE3 
>  <TR0 1>:  CE3  CH2  CZ3  HZ3 
>  <TR0 1>:  CZ3  CZ2  CH2  HH2 
>  <TR0 1>:  CE2  CH2  CZ2  HZ2 
>  total 10 improper torsions applied
>  10 improper torsions in old prep form

These are not errors, just information that you don't reall need to have.

...dac


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Received on Wed Mar 19 2014 - 07:30:04 PDT
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