Dear AMber users,
I am not getting a pdb file after funning nab,
even the presented tutorial file from the Amber site does not produce a
pdb file:
molecule m;
m = fd_helix( "abdna", "aaaaaaaaaa", "dna" );
putpdb( "nuc.pdb", m, "-wwpdb");
the nuc.c files contains:
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <math.h>
#include <assert.h>
#include "nabcode.h"
extern char NAB_rsbuf[];
static MOLECULE_T *m;
int main( argc, argv )
int argc;
char *argv[];
{
nabout = stdout; /*default*/
int mytaskid=0, numtasks=1;
static STRING_T *__st0001__ = NULL;
static STRING_T *__st0002__ = NULL;
static STRING_T *__st0003__ = NULL;
m = fd_helix( STEMP( __st0001__, "abdna" ), STEMP( __st0002__,
"aaaaaaaaaa" ), STEMP( __st0003__, "dna" ) );
putpdb( "nuc.pdb", m, "-wwpdb" );
exit( 0 );
}
I'm new to nab so any help on the matter would be greatly
appreciated.
best regards
Urszula
-----------------------------------------
Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
http://www.ug.edu.pl/
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Received on Wed Feb 26 2014 - 01:00:02 PST
